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| statistical methods in bioinformatics solutions: Bioinformatics and Computational Biology Solutions Using R and Bioconductor Robert Gentleman, 2005-08-31 Full four-color book. Some of the editors created the Bioconductor project and Robert Gentleman is one of the two originators of R. All methods are illustrated with publicly available data, and a major section of the book is devoted to fully worked case studies. Code underlying all of the computations that are shown is made available on a companion website, and readers can reproduce every number, figure, and table on their own computers. |
| statistical methods in bioinformatics solutions: Statistical Bioinformatics Jae K. Lee, 2011-09-20 This book provides an essential understanding of statistical concepts necessary for the analysis of genomic and proteomic data using computational techniques. The author presents both basic and advanced topics, focusing on those that are relevant to the computational analysis of large data sets in biology. Chapters begin with a description of a statistical concept and a current example from biomedical research, followed by more detailed presentation, discussion of limitations, and problems. The book starts with an introduction to probability and statistics for genome-wide data, and moves into topics such as clustering, classification, multi-dimensional visualization, experimental design, statistical resampling, and statistical network analysis. Clearly explains the use of bioinformatics tools in life sciences research without requiring an advanced background in math/statistics Enables biomedical and life sciences researchers to successfully evaluate the validity of their results and make inferences Enables statistical and quantitative researchers to rapidly learn novel statistical concepts and techniques appropriate for large biological data analysis Carefully revisits frequently used statistical approaches and highlights their limitations in large biological data analysis Offers programming examples and datasets Includes chapter problem sets, a glossary, a list of statistical notations, and appendices with references to background mathematical and technical material Features supplementary materials, including datasets, links, and a statistical package available online Statistical Bioinformatics is an ideal textbook for students in medicine, life sciences, and bioengineering, aimed at researchers who utilize computational tools for the analysis of genomic, proteomic, and many other emerging high-throughput molecular data. It may also serve as a rapid introduction to the bioinformatics science for statistical and computational students and audiences who have not experienced such analysis tasks before. |
| statistical methods in bioinformatics solutions: The Ten Most Wanted Solutions in Protein Bioinformatics Anna Tramontano, 2005-05-24 Utilizing high speed computational methods to extrapolate to the rest of the protein universe, the knowledge accumulated on a subset of examples, protein bioinformatics seeks to accomplish what was impossible before its invention, namely the assignment of functions or functional hypotheses for all known proteins.The Ten Most Wanted Solutions in Pro |
| statistical methods in bioinformatics solutions: A Text Book of Bioinformatics Vinay Sharma, 2008 1. Introduction to Bioinformatics 2. Introduction to Computers 3. Introduction to Internet 4. Search Engines: Tools for Web Search 5. Programming Languages 6. Genomics and Proteomics 7. Biological Databases 8. Sequence Analysis 9. Phylogenetic Analysis 10. Microarray Technology: A Boon to Biological Sciences 11. Bioinformatic..s in Drug Discovery: A Brief Overview 12. Genome Sequencing Projects 13. BTIS Network In India Index |
| statistical methods in bioinformatics solutions: Exploring Bioinformatics Caroline St. Clair, Jonathan E. Visick, 2013-12-12 Thoroughly revised and updated, Exploring Bioinformatics: A Project-Based Approach, Second Edition is intended for an introductory course in bioinformatics at the undergraduate level. Through hands-on projects, students are introduced to current biological problems and then explore and develop bioinformatic solutions to these issues. Each chapter presents a key problem, provides basic biological concepts, introduces computational techniques to address the problem, and guides students through the use of existing web-based tools and software solutions. This progression prepares students to tackle the On-Your-Own Project, where they develop their own software solutions. Topics such as antibiotic resistance, genetic disease, and genome sequencing provide context and relevance to capture student interest. |
| statistical methods in bioinformatics solutions: Developing Bioinformatics Computer Skills Cynthia Gibas, Per Jambeck, 2001 This practical, hands-on guide shows how to develop a structured approach to biological data and the tools needed to analyze it. It's aimed at scientists and students learning computational approaches to biological data, as well as experienced biology researchers starting to use computers to handle data. |
| statistical methods in bioinformatics solutions: Bioinformatics Data Skills Vince Buffalo, 2015-07 Learn the data skills necessary for turning large sequencing datasets into reproducible and robust biological findings. With this practical guide, youâ??ll learn how to use freely available open source tools to extract meaning from large complex biological data sets. At no other point in human history has our ability to understand lifeâ??s complexities been so dependent on our skills to work with and analyze data. This intermediate-level book teaches the general computational and data skills you need to analyze biological data. If you have experience with a scripting language like Python, youâ??re ready to get started. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Process bioinformatics data with powerful Unix pipelines and data tools Learn how to use exploratory data analysis techniques in the R language Use efficient methods to work with genomic range data and range operations Work with common genomics data file formats like FASTA, FASTQ, SAM, and BAM Manage your bioinformatics project with the Git version control system Tackle tedious data processing tasks with with Bash scripts and Makefiles |
| statistical methods in bioinformatics solutions: Introduction to Mathematical Methods in Bioinformatics Alexander Isaev, 2006-09-19 This book looks at the mathematical foundations of the models currently in use. All existing books on bioinformatics are software-orientated and they concentrate on computer implementations of mathematical models of biology. This book is unique in the sense that it looks at the mathematical foundations of the models, which are crucial for correct interpretation of the outputs of the models. |
| statistical methods in bioinformatics solutions: The Statistics of Gene Mapping David Siegmund, Benjamin Yakir, 2007-05-27 This book details the statistical concepts used in gene mapping, first in the experimental context of crosses of inbred lines and then in outbred populations, primarily humans. It presents elementary principles of probability and statistics, which are implemented by computational tools based on the R programming language to simulate genetic experiments and evaluate statistical analyses. Each chapter contains exercises, both theoretical and computational, some routine and others that are more challenging. The R programming language is developed in the text. |
| statistical methods in bioinformatics solutions: Statistics for High-Dimensional Data Peter Bühlmann, Sara van de Geer, 2011-06-08 Modern statistics deals with large and complex data sets, and consequently with models containing a large number of parameters. This book presents a detailed account of recently developed approaches, including the Lasso and versions of it for various models, boosting methods, undirected graphical modeling, and procedures controlling false positive selections. A special characteristic of the book is that it contains comprehensive mathematical theory on high-dimensional statistics combined with methodology, algorithms and illustrations with real data examples. This in-depth approach highlights the methods’ great potential and practical applicability in a variety of settings. As such, it is a valuable resource for researchers, graduate students and experts in statistics, applied mathematics and computer science. |
| statistical methods in bioinformatics solutions: Mixed Effects Models and Extensions in Ecology with R Alain Zuur, Elena N. Ieno, Neil Walker, Anatoly A. Saveliev, Graham M. Smith, 2009-03-05 Building on the successful Analysing Ecological Data (2007) by Zuur, Ieno and Smith, the authors now provide an expanded introduction to using regression and its extensions in analysing ecological data. As with the earlier book, real data sets from postgraduate ecological studies or research projects are used throughout. The first part of the book is a largely non-mathematical introduction to linear mixed effects modelling, GLM and GAM, zero inflated models, GEE, GLMM and GAMM. The second part provides ten case studies that range from koalas to deep sea research. These chapters provide an invaluable insight into analysing complex ecological datasets, including comparisons of different approaches to the same problem. By matching ecological questions and data structure to a case study, these chapters provide an excellent starting point to analysing your own data. Data and R code from all chapters are available from www.highstat.com. |
| statistical methods in bioinformatics solutions: Statistical Foundations of Data Science Jianqing Fan, Runze Li, Cun-Hui Zhang, Hui Zou, 2020-09-21 Statistical Foundations of Data Science gives a thorough introduction to commonly used statistical models, contemporary statistical machine learning techniques and algorithms, along with their mathematical insights and statistical theories. It aims to serve as a graduate-level textbook and a research monograph on high-dimensional statistics, sparsity and covariance learning, machine learning, and statistical inference. It includes ample exercises that involve both theoretical studies as well as empirical applications. The book begins with an introduction to the stylized features of big data and their impacts on statistical analysis. It then introduces multiple linear regression and expands the techniques of model building via nonparametric regression and kernel tricks. It provides a comprehensive account on sparsity explorations and model selections for multiple regression, generalized linear models, quantile regression, robust regression, hazards regression, among others. High-dimensional inference is also thoroughly addressed and so is feature screening. The book also provides a comprehensive account on high-dimensional covariance estimation, learning latent factors and hidden structures, as well as their applications to statistical estimation, inference, prediction and machine learning problems. It also introduces thoroughly statistical machine learning theory and methods for classification, clustering, and prediction. These include CART, random forests, boosting, support vector machines, clustering algorithms, sparse PCA, and deep learning. |
| statistical methods in bioinformatics solutions: Contact Manifolds in Riemannian Geometry D. E. Blair, 2006-11-14 |
| statistical methods in bioinformatics solutions: Clinical Prediction Models Ewout W. Steyerberg, 2008-12-16 Prediction models are important in various fields, including medicine, physics, meteorology, and finance. Prediction models will become more relevant in the medical field with the increase in knowledge on potential predictors of outcome, e.g. from genetics. Also, the number of applications will increase, e.g. with targeted early detection of disease, and individualized approaches to diagnostic testing and treatment. The current era of evidence-based medicine asks for an individualized approach to medical decision-making. Evidence-based medicine has a central place for meta-analysis to summarize results from randomized controlled trials; similarly prediction models may summarize the effects of predictors to provide individu- ized predictions of a diagnostic or prognostic outcome. Why Read This Book? My motivation for working on this book stems primarily from the fact that the development and applications of prediction models are often suboptimal in medical publications. With this book Ihope to contribute to better understanding of relevant issues and give practical advice on better modelling strategies than are nowadays widely used. Issues include: (a) Better predictive modelling is sometimes easily possible; e.g. a large data set with high quality data is available, but all continuous predictors are dich- omized, which is known to have several disadvantages. |
| statistical methods in bioinformatics solutions: Survival and Event History Analysis Odd Aalen, Ornulf Borgan, Hakon Gjessing, 2008-09-16 The aim of this book is to bridge the gap between standard textbook models and a range of models where the dynamic structure of the data manifests itself fully. The common denominator of such models is stochastic processes. The authors show how counting processes, martingales, and stochastic integrals fit very nicely with censored data. Beginning with standard analyses such as Kaplan-Meier plots and Cox regression, the presentation progresses to the additive hazard model and recurrent event data. Stochastic processes are also used as natural models for individual frailty; they allow sensible interpretations of a number of surprising artifacts seen in population data. The stochastic process framework is naturally connected to causality. The authors show how dynamic path analyses can incorporate many modern causality ideas in a framework that takes the time aspect seriously. To make the material accessible to the reader, a large number of practical examples, mainly from medicine, are developed in detail. Stochastic processes are introduced in an intuitive and non-technical manner. The book is aimed at investigators who use event history methods and want a better understanding of the statistical concepts. It is suitable as a textbook for graduate courses in statistics and biostatistics. |
| statistical methods in bioinformatics solutions: Mass Spectrometry Anshul Pandey, 2025-02-20 Mass Spectrometry: Techniques and Applications is a comprehensive guide to understanding and mastering the principles, techniques, and applications of this powerful analytical method. We cover a wide range of topics, delving into the intricacies of ionization methods, mass analyzers, ion detection, and data analysis strategies crucial for accurate and reliable mass spectrometry results. We explore the fundamentals of mass spectrometry, including ionization and fragmentation principles, isotopic patterns, and mass-to-charge ratio calculations. Various ionization techniques such as electrospray ionization (ESI), matrix-assisted laser desorption/ionization (MALDI), and electron ionization (EI) are elucidated, providing insights into their mechanisms and applications. Advanced topics like tandem mass spectrometry (MS/MS), high-resolution mass spectrometry (HRMS), and ion mobility spectrometry (IMS) are also covered, offering a comprehensive understanding of cutting-edge techniques and instrumentation. Practical aspects of mass spectrometry, including method development, calibration strategies, data interpretation, and troubleshooting, are detailed to help researchers, students, and professionals navigate experiments effectively. Additionally, we showcase the diverse applications of mass spectrometry across fields such as pharmaceuticals, environmental analysis, metabolomics, proteomics, forensics, and materials science. Case studies, real-world examples, and emerging trends provide valuable insights into the role of mass spectrometry in advancing scientific discovery and addressing societal challenges. With clear explanations, illustrative diagrams, and practical tips, Mass Spectrometry: Techniques and Applications serves as an indispensable resource for anyone seeking a comprehensive and up-to-date reference on this essential analytical technique. |
| statistical methods in bioinformatics solutions: Advances in Multivariate Statistical Methods Ashis Sengupta, 2009 Printbegrænsninger: Der kan printes 10 sider ad gangen og max. 40 sider pr. session |
| statistical methods in bioinformatics solutions: Making Sense of Statistical Methods in Social Research Keming Yang, 2010-03-25 Making Sense of Statistical Methods in Social Research is a critical introduction to the use of statistical methods in social research. It provides a unique approach to statistics that concentrates on helping social researchers think about the conceptual basis for the statistical methods they′re using. Whereas other statistical methods books instruct students in how to get through the statistics-based elements of their chosen course with as little mathematical knowledge as possible, this book aims to improve students′ statistical literacy, with the ultimate goal of turning them into competent researchers. Making Sense of Statistical Methods in Social Research contains careful discussion of the conceptual foundation of statistical methods, specifying what questions they can, or cannot, answer. The logic of each statistical method or procedure is explained, drawing on the historical development of the method, existing publications that apply the method, and methodological discussions. Statistical techniques and procedures are presented not for the purpose of showing how to produce statistics with certain software packages, but as a way of illuminating the underlying logic behind the symbols. The limited statistical knowledge that students gain from straight forward ′how-to′ books makes it very hard for students to move beyond introductory statistics courses to postgraduate study and research. This book should help to bridge this gap. |
| statistical methods in bioinformatics solutions: The Frailty Model Luc Duchateau, Paul Janssen, 2007-10-23 Clustered survival data are encountered in many scientific disciplines including human and veterinary medicine, biology, epidemiology, public health and demography. Frailty models provide a powerful tool to analyse clustered survival data. In contrast to the large number of research publications on frailty models, relatively few statistical software packages contain frailty models. It is demanding for statistical practitioners and graduate students to grasp a good knowledge on frailty models from the existing literature. This book provides an in-depth discussion and explanation of the basics of frailty model methodology for such readers. The discussion includes parametric and semiparametric frailty models and accelerated failure time models. Common techniques to fit frailty models include the EM-algorithm, penalised likelihood techniques, Laplacian integration and Bayesian techniques. More advanced frailty models for hierarchical data are also included. Real-lifeexamples are used to demonstrate how particular frailty models can be fitted and how the results should be interpreted. The programs to fit all the worked-out examples in the book are available from the Springer website with most of the programs developed in the freeware packages R and Winbugs. The book starts with a brief overview of some basic concepts in classical survival analysis, collecting what is needed for the reading on the more complex frailty models. |
| statistical methods in bioinformatics solutions: Genomics and Bioinformatics Tore Samuelsson, 2012-06-07 With the arrival of genomics and genome sequencing projects, biology has been transformed into an incredibly data-rich science. The vast amount of information generated has made computational analysis critical and has increased demand for skilled bioinformaticians. Designed for biologists without previous programming experience, this textbook provides a hands-on introduction to Unix, Perl and other tools used in sequence bioinformatics. Relevant biological topics are used throughout the book and are combined with practical bioinformatics examples, leading students through the process from biological problem to computational solution. All of the Perl scripts, sequence and database files used in the book are available for download at the accompanying website, allowing the reader to easily follow each example using their own computer. Programming examples are kept at an introductory level, avoiding complex mathematics that students often find daunting. The book demonstrates that even simple programs can provide powerful solutions to many complex bioinformatics problems. |
| statistical methods in bioinformatics solutions: Introduction to Bioinformatics Anna Tramontano, 2018-10-03 Guiding readers from the elucidation and analysis of a genomic sequence to the prediction of a protein structure and the identification of the molecular function, Introduction to Bioinformatics describes the rationale and limitations of the bioinformatics methods and tools that can help solve biological problems. Requiring only a limited mathematical and statistical background, the book shows how to efficiently apply these approaches to biological data and evaluate the resulting information. The author, an expert bioinformatics researcher, first addresses the ways of storing and retrieving the enormous amount of biological data produced every day and the methods of decrypting the information encoded by a genome. She then covers the tools that can detect and exploit the evolutionary and functional relationships among biological elements. Subsequent chapters illustrate how to predict the three-dimensional structure of a protein. The book concludes with a discussion of the future of bioinformatics. Even though the future will undoubtedly offer new tools for tackling problems, most of the fundamental aspects of bioinformatics will not change. This resource provides the essential information to understand bioinformatics methods, ultimately facilitating in the solution of biological problems. |
| statistical methods in bioinformatics solutions: Bayesian Modeling in Bioinformatics Dipak K. Dey, Samiran Ghosh, Bani K. Mallick, 2010-09-03 Bayesian Modeling in Bioinformatics discusses the development and application of Bayesian statistical methods for the analysis of high-throughput bioinformatics data arising from problems in molecular and structural biology and disease-related medical research, such as cancer. It presents a broad overview of statistical inference, clustering, and c |
| statistical methods in bioinformatics solutions: Proportional Hazards Regression John O'Quigley, 2008-01-25 The place in survival analysis now occupied by proportional hazards models and their generalizations is so large that it is no longer conceivable to offer a course on the subject without devoting at least half of the content to this topic alone. This book focuses on the theory and applications of a very broad class of models – proportional hazards and non-proportional hazards models, the former being viewed as a special case of the latter – which underlie modern survival analysis. Researchers and students alike will find that this text differs from most recent works in that it is mostly concerned with methodological issues rather than the analysis itself. |
| statistical methods in bioinformatics solutions: Bioconductor Case Studies Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon, 2010-06-09 Bioconductor software has become a standard tool for the analysis and comprehension of data from high-throughput genomics experiments. Its application spans a broad field of technologies used in contemporary molecular biology. In this volume, the authors present a collection of cases to apply Bioconductor tools in the analysis of microarray gene expression data. Topics covered include: (1) import and preprocessing of data from various sources; (2) statistical modeling of differential gene expression; (3) biological metadata; (4) application of graphs and graph rendering; (5) machine learning for clustering and classification problems; (6) gene set enrichment analysis. Each chapter of this book describes an analysis of real data using hands-on example driven approaches. Short exercises help in the learning process and invite more advanced considerations of key topics. The book is a dynamic document. All the code shown can be executed on a local computer, and readers are able to reproduce every computation, figure, and table. |
| statistical methods in bioinformatics solutions: Fundamentals of Clinical Research Antonella Bacchieri, Giovanni Della Cioppa, 2007-04-29 Here is a new book on methods and issues in clinical research. Its objectives can be summarized in three points. 1. Integrate medical and statistical components of clinical research. 2. Do justice to the operational and practical requirements of clinical research. 3. Give space to the ethical implications of methodological issues in clinical research. The book ends with a brief description of the drug development process and the phases of clinical development. |
| statistical methods in bioinformatics solutions: Statistical Methods in Diagnostic Medicine Xiao-Hua Zhou, Donna K. McClish, Nancy A. Obuchowski, 2009-09-25 An important role of diagnostic medicine research is to estimate and compare the accuracies of diagnostic tests. This book provides a comprehensive account of statistical methods for design and analysis of diagnostic studies, including sample size calculations, estimation of the accuracy of a diagnostic test, comparison of accuracies of competing diagnostic tests, and regression analysis of diagnostic accuracy data. Discussing recently developed methods for correction of verification bias and imperfect reference bias, methods for analysis of clustered diagnostic accuracy data, and meta-analysis methods, Statistical Methods in Diagnostic Medicine explains: * Common measures of diagnostic accuracy and designs for diagnostic accuracy studies * Methods of estimation and hypothesis testing of the accuracy of diagnostic tests * Meta-analysis * Advanced analytic techniques-including methods for comparing correlated ROC curves in multi-reader studies, correcting verification bias, and correcting when an imperfect gold standard is used Thoroughly detailed with numerous applications and end-of-chapter problems as well as a related FTP site providing FORTRAN program listings, data sets, and instructional hints, Statistical Methods in Diagnostic Medicine is a valuable addition to the literature of the field, serving as a much-needed guide for both clinicians and advanced students. |
| statistical methods in bioinformatics solutions: Quantitative Medical Data Analysis Using Mathematical Tools And Statistical Techniques Don Hong, Yu Shyr, 2007-07-10 Quantitative biomedical data analysis is a fast-growing interdisciplinary area of applied and computational mathematics, statistics, computer science, and biomedical science, leading to new fields such as bioinformatics, biomathematics, and biostatistics. In addition to traditional statistical techniques and mathematical models using differential equations, new developments with a very broad spectrum of applications, such as wavelets, spline functions, curve and surface subdivisions, sampling, and learning theory, have found their mathematical home in biomedical data analysis.This book gives a new and integrated introduction to quantitative medical data analysis from the viewpoint of biomathematicians, biostatisticians, and bioinformaticians. It offers a definitive resource to bridge the disciplines of mathematics, statistics, and biomedical sciences. Topics include mathematical models for cancer invasion and clinical sciences, data mining techniques and subset selection in data analysis, survival data analysis and survival models for cancer patients, statistical analysis and neural network techniques for genomic and proteomic data analysis, wavelet and spline applications for mass spectrometry data preprocessing and statistical computing. |
| statistical methods in bioinformatics solutions: Data Analytics in Bioinformatics Rabinarayan Satpathy, Tanupriya Choudhury, Suneeta Satpathy, Sachi Nandan Mohanty, Xiaobo Zhang, 2021-01-20 Machine learning techniques are increasingly being used to address problems in computational biology and bioinformatics. Novel machine learning computational techniques to analyze high throughput data in the form of sequences, gene and protein expressions, pathways, and images are becoming vital for understanding diseases and future drug discovery. Machine learning techniques such as Markov models, support vector machines, neural networks, and graphical models have been successful in analyzing life science data because of their capabilities in handling randomness and uncertainty of data noise and in generalization. Machine Learning in Bioinformatics compiles recent approaches in machine learning methods and their applications in addressing contemporary problems in bioinformatics approximating classification and prediction of disease, feature selection, dimensionality reduction, gene selection and classification of microarray data and many more. |
| statistical methods in bioinformatics solutions: Dynamic Regression Models for Survival Data Torben Martinussen, Thomas H. Scheike, 2007-11-24 This book studies and applies modern flexible regression models for survival data with a special focus on extensions of the Cox model and alternative models with the aim of describing time-varying effects of explanatory variables. Use of the suggested models and methods is illustrated on real data examples, using the R-package timereg developed by the authors, which is applied throughout the book with worked examples for the data sets. |
| statistical methods in bioinformatics solutions: Handbook of Statistical Analysis and Data Mining Applications Robert Nisbet, John Elder, Gary D. Miner, 2009-05-14 The Handbook of Statistical Analysis and Data Mining Applications is a comprehensive professional reference book that guides business analysts, scientists, engineers and researchers (both academic and industrial) through all stages of data analysis, model building and implementation. The Handbook helps one discern the technical and business problem, understand the strengths and weaknesses of modern data mining algorithms, and employ the right statistical methods for practical application. Use this book to address massive and complex datasets with novel statistical approaches and be able to objectively evaluate analyses and solutions. It has clear, intuitive explanations of the principles and tools for solving problems using modern analytic techniques, and discusses their application to real problems, in ways accessible and beneficial to practitioners across industries - from science and engineering, to medicine, academia and commerce. This handbook brings together, in a single resource, all the information a beginner will need to understand the tools and issues in data mining to build successful data mining solutions. - Written By Practitioners for Practitioners - Non-technical explanations build understanding without jargon and equations - Tutorials in numerous fields of study provide step-by-step instruction on how to use supplied tools to build models - Practical advice from successful real-world implementations - Includes extensive case studies, examples, MS PowerPoint slides and datasets - CD-DVD with valuable fully-working 90-day software included: Complete Data Miner - QC-Miner - Text Miner bound with book |
| statistical methods in bioinformatics solutions: Survival Analysis David G. Kleinbaum, Mitchel Klein, 2005 This text on survival analysis provides a straightforward and easy-to-follow introduction to the main concepts and techniques of the subject. It is based on numerous courses given by the author to students and researchers in the health sciences and is written with such readers in mind. Throughout, there is an emphasis on presenting each new topic motivated with real examples of a survival analysis investigation, and then presenting thorough analyses of real data sets. Each chapter concludes with practice exercises to help readers reinforce their understanding of the concepts covered in the chapter. |
| statistical methods in bioinformatics solutions: Analyzing Ecological Data Alain Zuur, Elena N. Ieno, Graham M. Smith, 2007-08-29 'Which test should I apply?' During the many years of working with ecologists, biologists and other environmental scientists, this is probably the question that the authors of this book hear the most often. The answer is always the same and along the lines of 'What are your underlying questions?', 'What do you want to show?'. The answers to these questions provide the starting point for a detailed discussion on the ecological background and purpose of the study. This then gives the basis for deciding on the most appropriate analytical approach. Therefore, a better start ing point for an ecologist is to avoid the phrase 'test' and think in terms of 'analy sis'. A test refers to something simple and unified that gives a clear answer in the form of a p-value: something rarely appropriate for ecological data. In practice, one has to apply a data exploration, check assumptions, validate the models, per haps apply a series of methods, and most importantly, interpret the results in terms of the underlying ecology and the ecological questions being investigated. Ecology is a quantitative science trying to answer difficult questions about the complex world we live in. Most ecologists are aware of these complexities, but few are fully equipped with the statistical sophistication and understanding to deal with them. |
| statistical methods in bioinformatics solutions: Exercises and Solutions in Biostatistical Theory Lawrence Kupper, 2010-11-09 Drawn from nearly four decades of Lawrence L. Kupper’s teaching experiences as a distinguished professor in the Department of Biostatistics at the University of North Carolina, Exercises and Solutions in Biostatistical Theory presents theoretical statistical concepts, numerous exercises, and detailed solutions that span topics from basic probability to statistical inference. The text links theoretical biostatistical principles to real-world situations, including some of the authors’ own biostatistical work that has addressed complicated design and analysis issues in the health sciences. This classroom-tested material is arranged sequentially starting with a chapter on basic probability theory, followed by chapters on univariate distribution theory and multivariate distribution theory. The last two chapters on statistical inference cover estimation theory and hypothesis testing theory. Each chapter begins with an in-depth introduction that summarizes the biostatistical principles needed to help solve the exercises. Exercises range in level of difficulty from fairly basic to more challenging (identified with asterisks). By working through the exercises and detailed solutions in this book, students will develop a deep understanding of the principles of biostatistical theory. The text shows how the biostatistical theory is effectively used to address important biostatistical issues in a variety of real-world settings. Mastering the theoretical biostatistical principles described in the book will prepare students for successful study of higher-level statistical theory and will help them become better biostatisticians. |
| statistical methods in bioinformatics solutions: Multiple Testing Procedures with Applications to Genomics Sandrine Dudoit, Mark J. van der Laan, 2007-12-18 This book establishes the theoretical foundations of a general methodology for multiple hypothesis testing and discusses its software implementation in R and SAS. These are applied to a range of problems in biomedical and genomic research, including identification of differentially expressed and co-expressed genes in high-throughput gene expression experiments; tests of association between gene expression measures and biological annotation metadata; sequence analysis; and genetic mapping of complex traits using single nucleotide polymorphisms. The procedures are based on a test statistics joint null distribution and provide Type I error control in testing problems involving general data generating distributions, null hypotheses, and test statistics. |
| statistical methods in bioinformatics solutions: Rankings and Preferences Joaquim Pinto da Costa, 2015-09-15 This book examines in detail the correlation, more precisely the weighted correlation and applications involving rankings. A general application is the evaluation of methods to predict rankings. Others involve rankings representing human preferences to infer user preferences; the use of weighted correlation with microarray data and those in the domain of time series. In this book we present new weighted correlation coefficients and new methods of weighted principal component analysis. We also introduce new methods of dimension reduction and clustering for time series data and describe some theoretical results on the weighted correlation coefficients in separate sections. |
| statistical methods in bioinformatics solutions: Biological Sequence Analysis Richard Durbin, 1998-04-23 Presents up-to-date computer methods for analysing DNA, RNA and protein sequences. |
| statistical methods in bioinformatics solutions: Problem Solving Handbook in Computational Biology and Bioinformatics Lenwood S. Heath, Naren Ramakrishnan, 2014-08-15 Bioinformatics is growing by leaps and bounds; theories/algorithms/statistical techniques are constantly evolving. Nevertheless, a core body of algorithmic ideas have emerged and researchers are beginning to adopt a problem solving approach to bioinformatics, wherein they use solutions to well-abstracted problems as building blocks to solve larger scope problems. Problem Solving Handbook for Computational Biology and Bioinformatics is an edited volume contributed by world renowned leaders in this field. This comprehensive handbook with problem solving emphasis, covers all relevant areas of computational biology and bioinformatics. Web resources and related themes are highlighted at every opportunity in this central easy-to-read reference. Designed for advanced-level students, researchers and professors in computer science and bioengineering as a reference or secondary text, this handbook is also suitable for professionals working in this industry. |
| statistical methods in bioinformatics solutions: Medical Applications of Finite Mixture Models Peter Schlattmann, 2009-03-02 Patients are not alike! This simple truth is often ignored in the analysis of me- cal data, since most of the time results are presented for the “average” patient. As a result, potential variability between patients is ignored when presenting, e.g., the results of a multiple linear regression model. In medicine there are more and more attempts to individualize therapy; thus, from the author’s point of view biostatis- cians should support these efforts. Therefore, one of the tasks of the statistician is to identify heterogeneity of patients and, if possible, to explain part of it with known explanatory covariates. Finite mixture models may be used to aid this purpose. This book tries to show that there are a large range of applications. They include the analysis of gene - pression data, pharmacokinetics, toxicology, and the determinants of beta-carotene plasma levels. Other examples include disease clustering, data from psychophysi- ogy, and meta-analysis of published studies. The book is intended as a resource for those interested in applying these methods. |
| statistical methods in bioinformatics solutions: Computational Statistics Geof H. Givens, Jennifer A. Hoeting, 2012-11-06 This new edition continues to serve as a comprehensive guide to modern and classical methods of statistical computing. The book is comprised of four main parts spanning the field: Optimization Integration and Simulation Bootstrapping Density Estimation and Smoothing Within these sections,each chapter includes a comprehensive introduction and step-by-step implementation summaries to accompany the explanations of key methods. The new edition includes updated coverage and existing topics as well as new topics such as adaptive MCMC and bootstrapping for correlated data. The book website now includes comprehensive R code for the entire book. There are extensive exercises, real examples, and helpful insights about how to use the methods in practice. |
| statistical methods in bioinformatics solutions: Bioinformatics Computing Bryan P. Bergeron, 2003 Comprehensive and concise, this handbook has chapters on computing visualization, large database designs, advanced pattern matching and other key bioinformatics techniques. It is a practical guide to computing in the growing field of Bioinformatics--the study of how information is represented and transmitted in biological systems, starting at the molecular level. |
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There is very little statistical evidence. It was designed to facilitate the combination of qualitative methods with statistical analysis. The generalizations are advanced on the basis of statistical …
Statistics - Wikipedia
Statistics is the discipline that deals with data, facts and figures with which meaningful information is inferred. Data may represent a numerical value, in form of quantitative data, or a label, as …
STATISTICAL Definition & Meaning | Dictionary.com
of, pertaining to, consisting of, or based on statistics. statistics. Examples have not been reviewed. In doing so, the judges said she could not point to “background circumstances” or …
What is Statistical Analysis? - GeeksforGeeks
Apr 15, 2025 · Statistical Analysis means gathering, understanding, and showing data to find patterns and connections that can help us make decisions. It includes lots of different ways to …
Statistics | Definition, Types, & Importance | Britannica
May 20, 2025 · statistics, the science of collecting, analyzing, presenting, and interpreting data. Governmental needs for census data as well as information about a variety of economic …
Statistical - definition of statistical by The Free Dictionary
Define statistical. statistical synonyms, statistical pronunciation, statistical translation, English dictionary definition of statistical. adj. Of, relating to, or employing statistics or the principles of …
STATISTICAL definition and meaning | Collins English Dictionary
Statistical means relating to the use of statistics. The report contains a great deal of statistical information. Of or relating to statistics.... Click for English pronunciations, examples sentences, …
Introduction to Research Statistical Analysis: An Overview of the ...
This article covers many statistical ideas essential to research statistical analysis. Sample size is explained through the concepts of statistical significance level and power.
Statistics - Definition, Examples, Mathematical Statistics
Statistics is defined as the process of collection of data, classifying data, representing the data for easy interpretation, and further analysis of data. Statistics also is referred to as arriving at …
