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| python for bioinformatics jason kinser: Python for Bioinformatics Jason Kinser, 2010-10-25 Python for Bioinformatics provides a clear introduction to the Python programming language and instructs beginners on the development of simple programming exercises. Important Notice: The digital edition of this book is missing some of the images or content found in the physical edition. |
| python for bioinformatics jason kinser: Image Operators Jason M. Kinser, 2018-10-10 For decades, researchers have been developing algorithms to manipulate and analyze images. From this, a common set of image tools now appear in many high-level programming languages. Consequently, the amount of coding required by a user has significantly lessened over the years. While the libraries for image analysis are coalescing to a common toolkit, the language of image analysis has remained stagnant. Often, textual descriptions of an analytical protocol consume far more real estate than does the computer code required to execute the processes. Furthermore, the textual explanations are sometimes vague or incomplete. This book offers a precise mathematical language for the field of image processing. Defined operators correspond directly to standard library routines, greatly facilitating the translation between mathematical descriptions and computer script. This text is presented with Python 3 examples. This text will provide a unified language for image processing Provides the theoretical foundations with accompanied Python® scripts to precisely describe steps in image processing applications Linkage between scripts and theory through operators will be presented All chapters will contain theories, operator equivalents, examples, Python® codes, and exercises |
| python for bioinformatics jason kinser: Exploring Bioinformatics Caroline St. Clair, Jonathan E. Visick, 2013-12-12 Thoroughly revised and updated, Exploring Bioinformatics: A Project-Based Approach, Second Edition is intended for an introductory course in bioinformatics at the undergraduate level. Through hands-on projects, students are introduced to current biological problems and then explore and develop bioinformatic solutions to these issues. Each chapter presents a key problem, provides basic biological concepts, introduces computational techniques to address the problem, and guides students through the use of existing web-based tools and software solutions. This progression prepares students to tackle the On-Your-Own Project, where they develop their own software solutions. Topics such as antibiotic resistance, genetic disease, and genome sequencing provide context and relevance to capture student interest. |
| python for bioinformatics jason kinser: Modeling and Simulation in Python Allen B. Downey, 2023-05-30 Modeling and Simulation in Python teaches readers how to analyze real-world scenarios using the Python programming language, requiring no more than a background in high school math. Modeling and Simulation in Python is a thorough but easy-to-follow introduction to physical modeling—that is, the art of describing and simulating real-world systems. Readers are guided through modeling things like world population growth, infectious disease, bungee jumping, baseball flight trajectories, celestial mechanics, and more while simultaneously developing a strong understanding of fundamental programming concepts like loops, vectors, and functions. Clear and concise, with a focus on learning by doing, the author spares the reader abstract, theoretical complexities and gets right to hands-on examples that show how to produce useful models and simulations. |
| python for bioinformatics jason kinser: Genetics of Populations Philip W. Hedrick, 2009-12-29 The Fourth Edition of Genetics of Populations is the most current, comprehensive, and accessible introduction to the field for advanced undergraduate and graduate students, and researchers in genetics, evolution, conservation, and related fields. In the past several years, interest in the application of population genetics principles to new molecular data has increased greatly, and Dr. Hedrick's new edition exemplifies his commitment to keeping pace with this dynamic area of study. Reorganized to allow students to focus more sharply on key material, the Fourth Edition integrates coverage of theoretical issues with a clear presentation of experimental population genetics and empirical data. Drawing examples from both recent and classic studies, and using a variety of organisms to illustrate the vast developments of population genetics, this text provides students and researchers with the most comprehensive resource in the field. |
| python for bioinformatics jason kinser: Essential Genetics - Book Alone Daniel L. Hartl, 2012-10-12 Every new print textbook includes access to the student companion website Updated throughout to reflect the latest discoveries in this fast-paced field, Essential Genetics: A Genomics Perspective, Sixth Edition, provides an accessible, student-friendly introduction to modern genetics. Designed for the shorter, less comprehensive course, the Sixth Edition presents carefully chosen topics that provide a solid foundation to the basic understanding of gene mutation, expression, and regulation. It goes on to discuss the development and progression of genetics as a field of study within a societal and historical context. The Sixth Edition includes new learning objectives within each chapter which helps students identify what they should know as a result of their studying and highlights the skills they should acquire through various practice problems. What's new in the Sixth Edition? Chapter 1 includes a new section on the origin of life Chapter 2 includes a revised discussion of the complementation test and how it is used to determine whether two mutations have defects in the same gene Chapter 3 incorporates new data showing that the folding of interphase chromatin into chromosome territories has the form of a fractal globule. It also includes a new section on progenitor cells and embryonic stem cells Chapter 4 includes a new section discussing how copy-number variation in human amylase evolved in response to increased dietary starch as well as the latest on hotspots of recombination Chapter 5 is updated with the latest information on hazards of polycarbonate food containers. It also includes a new section on the genetics of schizophrenia and autism spectrum disorder Chapter 6 includes a revised section on restriction mapping and also discusses the newest massively parallel DNA sequencing technologies that can yield the equivalent of 200 human genomes' worth of DNA sequence in a single sequencing run Chapter 7 has been updated with a shortened and streamlined discussion of recombination in bacteriophage Chapter 8 includes new discoveries concerning the mechanisms of intrinsic transcriptional termination as well as rho-dependent termination Chapter 9 is updated with a new section on stochastic effects on gene expression and an expanded discussion of the lactose operon. There is also a revised discussion of galactose gene regulation in yeast, as well as new sections on lon noncoding RNAs Chapter 10 includes new sections on ancient DNA sequences of the Neandertal and Denisovan genomes Chapter 11 examines master control genes in development Chapter 12 includes a new section on the repair of double-stranded breaks in DNA by nonhomologous end joining or template-directed gap repair Chapter 13 has been extensively revised with the latest data on cancer. Chapter 14 includes a new section on the detection of natural selection, as well as a new section on conservation genetics Key Features of Essential Genetics, Sixth Edition: New Learning Objectives w |
| python for bioinformatics jason kinser: Genetics of Populations Philip Hedrick, 2011-08-24 The Fourth Edition of Genetics of Populations is the most current, comprehensive, and accessible introduction to the field for advanced undergraduate and graduate students, and researchers in genetics, evolution, conservation, and related fields. In the past several years, interest in the application of population genetics principles to new molecular data has increased greatly, and Dr. Hedrick's new edition exemplifies his commitment to keeping pace with this dynamic area of study. Reorganized to allow students to focus more sharply on key material, the Fourth Edition integrates coverage of theoretical issues with a clear presentation of experimental population genetics and empirical data. Drawing examples from both recent and classic studies, and using a variety of organisms to illustrate the vast developments of population genetics, this text provides students and researchers with the most comprehensive resource in the field. |
| python for bioinformatics jason kinser: Clinical Information Systems , |
| python for bioinformatics jason kinser: R for Medicine and Biology Paul D. Lewis, 2009-05-08 R is quickly becoming the number one choice for users in the fields of biology, medicine, and bioinformatics as their main means of storing, processing, sharing, and analyzing biomedical data. R for Medicine and Biology is a step-by-step guide through the use of the statistical environment R, as used in a biomedical domain. Ideal for healthcare professionals, scientists, informaticists, and statistical experts, this resource will provide even the novice programmer with the tools necessary to process and analyze their data using the R environment. Introductory chapters guide readers in how to obtain, install, and become familiar with R and provide a clear introduction to the programming language using numerous worked examples. Later chapters outline how R can be used, not just for biomedical data analysis, but also as an environment for the processing, storing, reporting, and sharing of data and results. The remainder of the book explores areas of R application to common domains of biomedical informatics, including imaging, statistical analysis, data mining/modeling, pathology informatics, epidemiology, clinical trials, and metadata usage. R for Medicine and Biology will provide you with a single desk reference for the R environment and its many capabilities. |
| python for bioinformatics jason kinser: Alcamo's Fundamentals of Microbiology Jeffrey C. Pommerville, 2010-03-08 The ninth edition of award-winning author Jeffrey Pommerville's classic text provides nursing and allied health students with a firm foundation in microbiology, with an emphasis on human disease. An educator himself, Dr. Pommerville incorporates accessible, engaging pedagogical elements and student-friendly ancillaries to help students maximize their understanding and retention of key concepts. Ideal for the non-major, the ninth edition includes numerous updates and additions, including the latest disease data and statistics, new material on emerging disease outbreaks, an expanded use of concept maps, and may other pedagogical features. With an inviting Learning Design format and Study Smart notes to students, Alcamo's Fundamentals of Microbiology, Ninth Edition ensures student success as they delve into the exciting world of microbiology. |
| python for bioinformatics jason kinser: Alcamo's Fundamentals of Microbiology , |
| python for bioinformatics jason kinser: Essential Genetics , |
| python for bioinformatics jason kinser: Essential Genetics Daniel Hartl, 2011 Updated to reflect the latest discoveries in the field, the Fifth Edition of Hartl's classic text provides an accessible, student-friendly introduction to contemporary genetics. Designed for the shorter, less comprehensive introductory course, Essential Genetics: A Genomic Perspective, Fifth Edition includes carefully chosen topics that provide a solid foundation to the basic understanding of gene mutation, expression, and regulation. New and updated sections on genetic analysis, molecular genetics, probability in genetics, and pathogenicity islands ensure that students are kept up-to-date on current key topics. The text also provides students with a sense of the social and historical context in which genetics has developed. The updated companion web site provides numerous study tools, such as animated flashcards, crosswords, practice quizzes and more! New and expanded end-of-chapter material allows for a mastery of key genetics concepts and is ideal for homework assignments and in-class discussion. |
| python for bioinformatics jason kinser: Mammalogy Terry Vaughan, James Ryan, Nicholas Czaplewski, 2011-04-21 Newly revised and extensively updated, the fifth edition of Mammalogy explains and clarifies the subject of mammalian biology as a unified whole, taking care to discuss the latest and most fascinating discoveries in the field. In recent years we witnessed significant changes in the taxonomy of mammals. The authors kept pace with such changes and revised each chapter to reflect the most current data and statistics available. New pedagogical elements, including chapter outlines, lists of key morphological characteristics, and further reading sections, help readers grasp the most important concepts and explore additional content on their own. --Book Jacket. |
| python for bioinformatics jason kinser: Lewin's GENES X Benjamin Lewin, Jocelyn Krebs, Stephen T. Kilpatrick, Elliott S. Goldstein, 2011 Jacket. |
| python for bioinformatics jason kinser: Lewin's Essential GENES Jocelyn Krebs, Elliott S. Goldstein, Stephen T. Kilpatrick, 2010 The new edition of Lewin's Essential GENES is the most accessible, student-friendly text of its kind! Completely revised and rewritten, the Second Edition continues to provide students with the latest findings in the field of molecular biology and molecular genetics. An exceptional new pedagogy enhances student learning and helps readers understand and retain key material like never before. New Concept and Reasoning Checks at the end of each chapter section, End of Chapter Questions and Further Readings for each chapter, and several categories of special topics boxes within each chapter expand and reinforce important concepts. The reorganization of topics in this edition allows students to focus more sharply on the key material at hand and improves the natural flow of course material. New end-of-chapter questions reviews major points in the chapter and allow students to test themselves on important course material. |
| python for bioinformatics jason kinser: Lewin's Genes XI Jocelyn E. Krebs, Benjamin Lewin, Elliott S. Goldstein, Stephen T. Kilpatrick, 2014 Molecular Biology is a rapidly advancing field with a constant flow of new information and cutting-edge developements that impact our lives. Lewin's GENES has long been the essential resource for providing the teaching community with the most modern presentation to this dynamic area of study. GENES XI continues this tradition by introducing the most current data from the field, covering gene structure, sequencing, organization, and expression. It has enlisted a wealth of subject-matter experts, from top institutions, to provide content updates and revisions in their individual areas of study. A reorganized chapter presentation provides a clear, more student-friendly introduction to course material than ever before. - Updated content throughout to keep pace with this fast-paced field.- Reorganized chapter presentation provides a clear, student-friendly introduction to course material.- Expanded coverage describing the connection between replication and the cell cycle is included, and presents eukaryotes as well as prokaryotes.- Available with new online Molecular Biology Animations.- Online access code for the companion website is included with every new book. The companion website offers numerous study aids and learning tools to help students get the most out of their course.- Instructor's supplements include: PowerPoint Image Bank, PowerPoint Lecture Slides, and Test Bank. |
| python for bioinformatics jason kinser: Fundamentals of Microbiology Jeffrey C. Pommerville, 2014-12 Ideal for health science and nursing students, Fundamentals of Microbiology: Body Systems Edition, Third Edition retains the engaging, student-friendly style and active learning approach for which award-winning author and educator Jeffrey Pommerville is known. Highly suitable for non-science majors, the fully revised and updated third edition of this bestselling text contains new pedagogical elements and an established learning design format that improves comprehension and retention and makes learning more enjoyable. Unlike other texts in the field, Fundamentals of Microbiology: Body Systems Edition takes a global perspective on microbiology and infectious disease, and supports students in self-evaluation and concept absorption. Furthermore, it includes real-life examples to help students understand the significance of a concept and its application in today's world, whether to their local community or beyond. New information pertinent to nursing and health sciences has been added, while many figures and tables have been updated, revised, and/or reorganized for clarity. Comprehensive yet accessible, the Third Edition is an essential text for non-science majors in health science and nursing programs taking an introductory microbiology course. -- Provided by publisher. |
| python for bioinformatics jason kinser: Lewin's CELLS Lynne Cassimeris, Vishwanath Lingappa, George Plopper, Benjamin Lewin, 2011-03-25 Completely revised and updated to incorporate the latest data in the field, Lewin's CELLS, Second Edition is the ideal resource for advanced undergraduate and graduate students entering the world of cell biology. Redesigned to incorporate new learning tools and elements, this edition continues to provide readers with current coverage of the structure, organization, growth, regulation, movements, and interaction of cells, with an emphasis on eukaryotic cells. Under the direction of three expert lead editors, new chapters on metabolism and general molecular biology have been added by subject specialist. All chapters have been carefully edited to maintain consistent use of terminology and to achieve a homogenous level of detail and rigor. A new design incorporates many new pedagogical elements, including Concept & Reasoning Questions, Methods boxes, Clinical Applications boxes, and more. |
| python for bioinformatics jason kinser: Botany James D. Mauseth, 2014 As new information is introduced and environmental changes occur, Plant Biology continues to develop and evolve as a science. Updated and revised to keep pace with these developments, the Fifth Edition of Botany: An Introduction to Plant Biology provides a modern and comprehensive overview of the fundamentals of botany while retaining the important focus of natural selection, analysis of botanical phenomena, and diversity. Students are first introduced to topics that should be most familiar (plant structure), proceed to those less familiar (plant physiology and development), and conclude with topics that are likely least familiar to the introductory student (genetics, evolution, and ecology). Mauseth is sure to provide the latest material on molecular biology and plant biotechnology in an effort to keep pace with these advancing areas of study. All sections are written to be self-contained allowing for a flexible presentation of course material.Key Features:- Includes new content on molecular biology, plant biotechnology, and the most recent coverage of taxonomy and phylogeny of plants.- Now available with a new electronic laboratory manual.- Plants Do Things Differently boxes help students understand and compare plant biology with human biology.- End-of-chapter study guide includes nearly 50 or more questions in each chapter, urging students to test themselves on the most important points in the chapter.- Alternatives boxes encourage students to think expansively about alternative aspects of plant biology that are more advantageous in certain conditions. |
| python for bioinformatics jason kinser: Human Biology Daniel Chiras, 2012 Written for the introductory human biology course, the Seventh Edition of Chiras' acclaimed text maintains the original organizational theme of homeostasis presented in previous editions to present the fundamental concepts of mammalian biology and human structure and function. Chiras discusses the scientific process in a thought-provoking way that asks students to become deeper, more critical thinkers. The focus on health and homeostasis allows students to learn key concepts while also assessing their own health needs. An updated and enhanced ancillary package includes numerous student and instructor tools to help students get the most out of their course! |
| python for bioinformatics jason kinser: Essential Genetics Daniel L. Hartl, 2014 This book provides an introduction to modern genetics. |
| python for bioinformatics jason kinser: Mammalogy , |
| python for bioinformatics jason kinser: Basic Applied Bioinformatics Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, Mir Asif Iquebal, 2017-09-15 An accessible guide that introduces students in all areas of life sciences to bioinformatics Basic Applied Bioinformatics provides a practical guidance in bioinformatics and helps students to optimize parameters for data analysis and then to draw accurate conclusions from the results. In addition to parameter optimization, the text will also familiarize students with relevant terminology. Basic Applied Bioinformatics is written as an accessible guide for graduate students studying bioinformatics, biotechnology, and other related sub-disciplines of the life sciences. This accessible text outlines the basics of bioinformatics, including pertinent information such as downloading molecular sequences (nucleotide and protein) from databases; BLAST analyses; primer designing and its quality checking, multiple sequence alignment (global and local using freely available software); phylogenetic tree construction (using UPGMA, NJ, MP, ME, FM algorithm and MEGA7 suite), prediction of protein structures and genome annotation, RNASeq data analyses and identification of differentially expressed genes and similar advanced bioinformatics analyses. The authors Chandra Sekhar Mukhopadhyay, Ratan Kumar Choudhary, and Mir Asif Iquebal are noted experts in the field and have come together to provide an updated information on bioinformatics. Salient features of this book includes: Accessible and updated information on bioinformatics tools A practical step-by-step approach to molecular-data analyses Information pertinent to study a variety of disciplines including biotechnology, zoology, bioinformatics and other related fields Worked examples, glossary terms, problems and solutions Basic Applied Bioinformatics gives students studying bioinformatics, agricultural biotechnology, animal biotechnology, medical biotechnology, microbial biotechnology, and zoology an updated introduction to the growing field of bioinformatics. |
| python for bioinformatics jason kinser: Kinematic Labs with Mobile Devices Jason M. Kinser, 2015 As technology advances education has expanded from the classroom into other formats including on-line delivery, flipped classrooms and hybrid delivery. Congruent with these is the need for alternative formats for laboratory experiences. This explosion in technology has also placed in the hands of a majority of students a sensor suite tucked neatly into their smart phones or smart tablets. The popularity of these devices provides a new avenue for the non-traditional kinematic lab experience. This book addresses this issue by providing 13 labs spanning the common topics in the first semester of university level physics. Each lab is designed to use only the student's smart phone, laptop and items easily found in big-box stores or a hobby shop. Each lab contains theory, set-up instructions and basic analysis techniques. All of these labs can be performed outside of the traditional university lab setting and initial costs averaging less than $8 per student per lab excluding thesmart phone and laptop. |
| python for bioinformatics jason kinser: Mastering Python for Bioinformatics Ken Youens-Clark, 2021-05-05 Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained, usually by students and researchers who've never learned basic programming skills. This practical guide shows postdoc bioinformatics professionals and students how to exploit the best parts of Python to solve problems in biology while creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates not only how to write effective Python code but also how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools including linters, formatters, type checkers, and tests to create documented and tested programs. You'll also tackle 14 challenges in Rosalind, a problem-solving platform for learning bioinformatics and programming. Create command-line Python programs to document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA and FASTQ Find patterns of text using regular expressions Use higher-order functions in Python like filter(), map(), and reduce() |
| python for bioinformatics jason kinser: Python for Bioinformatics Sebastian Bassi, 2017-08-07 In today's data driven biology, programming knowledge is essential in turning ideas into testable hypothesis. Based on the author’s extensive experience, Python for Bioinformatics, Second Edition helps biologists get to grips with the basics of software development. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. This new edition is updated throughout to Python 3 and is designed not just to help scientists master the basics, but to do more in less time and in a reproducible way. New developments added in this edition include NoSQL databases, the Anaconda Python distribution, graphical libraries like Bokeh, and the use of Github for collaborative development. |
| python for bioinformatics jason kinser: Concepts in Bioinformatics and Genomics Jamil Momand, Alison McCurdy, 2017 Concepts in Bioinformatics and Genomics takes a conceptual approach, balancing biology, mathematics, and programming while highlighting relevant real-world applications and providing students with the tools to compute and analyze biological data. Through many thought-provoking exercises,students will develop a deeper understanding of the molecular biology, basic probability, software programs, and program-coding methodology underpinning this exciting field. |
| python for bioinformatics jason kinser: Scientific Data Management Arie Shoshani, Doron Rotem, 2009-12-16 Dealing with the volume, complexity, and diversity of data currently being generated by scientific experiments and simulations often causes scientists to waste productive time. Scientific Data Management: Challenges, Technology, and Deployment describes cutting-edge technologies and solutions for managing and analyzing vast amounts of data, helping |
| python for bioinformatics jason kinser: Perspectives in Optoelectronics Sudhanshu Shekhar Jha, 1995 Optoelectronics is a rapidly expanding field of research and development. In years to come, it is destined to play a primary role in the growing information industry. The basic philosophy behind the science and technology of optoelectronics is to create and develop photonic devices in which optical photons (light waves) instead of electronic carriers, are manipulated for the conventional task performed by microelectronics. Thanks to the availability of large bandwidth at optical frequencies, the development of cost-effective low-loss low-dispersion silica fibers for optical transmission, and the possibility of ultra-fast two-dimensional processing, the field of present-day microelectronics is moving steadily towards this new technology of optoelectronics and photonics.This volume presents reviews of different areas of optoelectronics written by international experts in the field, covering most of the topics of recent importance. It includes detailed discussions on semiconductor lasers and optical amplifiers; optical fiber transmission; photodetectors; optoelectronic and photonic integrated circuits; light-wave telecommunications; optical signal and image processing; optical computing; nonlinear and integrated optics; space-time Fourier optics; optical metrology and sensing and optical interconnects. All chapters are written in the style of a textbook containing tutorial sections which should be of great use to graduate students. The volume should serve as an excellent book for graduate level course on optoelectronics, modern optical engineering, and optical communications. |
| python for bioinformatics jason kinser: Right Research Geoffrey Rockwell, Oliver Rossier, Chelsea Miya, 2021-04-29 The book is current and interdisciplinary, engaging with recent developments around this topic and including perspectives from sciences, arts, and humanities. It will be a welcome contribution to studies of the Anthropocene as well as studies of research methods and practices. —Sam Mickey, University of S. Francisco Educational institutions play an instrumental role in social and political change, and are responsible for the environmental and social ethics of their institutional practices. The essays in this volume critically examine scholarly research practices in the age of the Anthropocene, and ask what accountability educators and researchers have in ‘righting’ their relationship to the environment. The volume further calls attention to the geographical, financial, legal and political barriers that might limit scholarly dialogue by excluding researchers from participating in traditional modes of scholarly conversation. As such, Right Research is a bold invitation to the academic community to rigorous self-reflection on what their research looks like, how it is conducted, and how it might be developed so as to increase accessibility and sustainability, and decrease carbon footprint. The volume follows a three-part structure that bridges conceptual and practical concerns: the first section challenges our assumptions about how sustainability is defined, measured and practiced; the second section showcases artist-researchers whose work engages with the impact of humans on our environment; while the third section investigates how academic spaces can model eco-conscious behaviour. This timely volume responds to an increased demand for environmentally sustainable research, and is outstanding not only in its interdisciplinarity, but its embrace of non-traditional formats, spanning academic articles, creative acts, personal reflections and dialogues. Right Research will be a valuable resource for educators and researchers interested in developing and hybridizing their scholarly communication formats in the face of the current climate crisis. |
| python for bioinformatics jason kinser: Bioinformatics Programming Using Python Mitchell L Model, 2009-12-08 Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the tips and traps section in each chapter |
| python for bioinformatics jason kinser: Python for Software Design Allen Downey, 2009-03-09 Python for Software Design is a concise introduction to software design using the Python programming language. The focus is on the programming process, with special emphasis on debugging. The book includes a wide range of exercises, from short examples to substantial projects, so that students have ample opportunity to practice each new concept. |
| python for bioinformatics jason kinser: The C++ Programming Language Bjarne Stroustrup, 2000 The most widely read and trusted guide to the C++ language, standard library, and design techniques includes significant new updates and two new appendices on internationalization and Standard Library technicalities. It is the only book with authoritative, accessible coverage of every major element of ISO/ANSI Standard C++. |
| python for bioinformatics jason kinser: Green's Functions and Linear Differential Equations Prem K. Kythe, 2011-01-21 Green's Functions and Linear Differential Equations: Theory, Applications, and Computation presents a variety of methods to solve linear ordinary differential equations (ODEs) and partial differential equations (PDEs). The text provides a sufficient theoretical basis to understand Green's function method, which is used to solve initial and boundary |
| python for bioinformatics jason kinser: Structural Bioinformatics Jenny Gu, Philip E. Bourne, 2011-09-20 Structural Bioinformatics was the first major effort to show the application of the principles and basic knowledge of the larger field of bioinformatics to questions focusing on macromolecular structure, such as the prediction of protein structure and how proteins carry out cellular functions, and how the application of bioinformatics to these life science issues can improve healthcare by accelerating drug discovery and development. Designed primarily as a reference, the first edition nevertheless saw widespread use as a textbook in graduate and undergraduate university courses dealing with the theories and associated algorithms, resources, and tools used in the analysis, prediction, and theoretical underpinnings of DNA, RNA, and proteins. This new edition contains not only thorough updates of the advances in structural bioinformatics since publication of the first edition, but also features eleven new chapters dealing with frontier areas of high scientific impact, including: sampling and search techniques; use of mass spectrometry; genome functional annotation; and much more. Offering detailed coverage for practitioners while remaining accessible to the novice, Structural Bioinformatics, Second Edition is a valuable resource and an excellent textbook for a range of readers in the bioinformatics and advanced biology fields. Praise for the previous edition: This book is a gold mine of fundamental and practical information in an area not previously well represented in book form. —Biochemistry and Molecular Education ... destined to become a classic reference work for workers at all levels in structural bioinformatics...recommended with great enthusiasm for educators, researchers, and graduate students. —BAMBED ...a useful and timely summary of a rapidly expanding field. —Nature Structural Biology ...a terrific job in this timely creation of a compilation of articles that appropriately addresses this issue. —Briefings in Bioinformatics |
| python for bioinformatics jason kinser: Fundamentals of Natural Computing Leandro Nunes de Castro, 2006-06-02 Natural computing brings together nature and computing to develop new computational tools for problem solving; to synthesize natural patterns and behaviors in computers; and to potentially design novel types of computers. Fundamentals of Natural Computing: Basic Concepts, Algorithms, and Applications presents a wide-ranging survey of novel techniqu |
| python for bioinformatics jason kinser: Biostatistics For Dummies John C. Pezzullo, 2013-07-29 Score your highest in biostatistics Biostatistics is a required course for students of medicine, epidemiology, forestry, agriculture, bioinformatics, and public health. In years past this course has been mainly a graduate-level requirement; however its application is growing and course offerings at the undergraduate level are exploding. Biostatistics For Dummies is an excellent resource for those taking a course, as well as for those in need of a handy reference to this complex material. Biostatisticians—analysts of biological data—are charged with finding answers to some of the world's most pressing health questions: how safe or effective are drugs hitting the market today? What causes autism? What are the risk factors for cardiovascular disease? Are those risk factors different for men and women or different ethnic groups? Biostatistics For Dummies examines these and other questions associated with the study of biostatistics. Provides plain-English explanations of techniques and clinical examples to help Serves as an excellent course supplement for those struggling with the complexities of the biostatistics Tracks to a typical, introductory biostatistics course Biostatistics For Dummies is an excellent resource for anyone looking to succeed in this difficult course. |
| python for bioinformatics jason kinser: Ectogenesis Scott Gelfand, John R. Shook, 2006 This book raises many moral, legal, social, and political, questions related to possible development, in the near future, of an artificial womb for human use. Is ectogenesis ever morally permissible? If so, under what circumstances? Will ectogenesis enhance or diminish women's reproductive rights and/or their economic opportunities? These are some of the difficult and crucial questions this anthology addresses and attempts to answer. |
| python for bioinformatics jason kinser: Lewin's GENES XII Jocelyn E. Krebs, Elliott S. Goldstein, Stephen T. Kilpatrick, 2017-03-02 Now in its twelfth edition, Lewin's GENES continues to lead with new information and cutting-edge developments, covering gene structure, sequencing, organization, and expression. Leading scientists provide revisions and updates in their individual field of study offering readers current data and information on the rapidly changing subjects in molecular biology. |
Is there a "not equal" operator in Python? - Stack Overflow
Jun 16, 2012 · Python is dynamically, but strongly typed, and other statically typed languages would complain about comparing different types. There's also the else clause: # This will …
What does colon equal (:=) in Python mean? - Stack Overflow
In Python this is simply =. To translate this pseudocode into Python you would need to know the data structures being referenced, and a bit more of the algorithm implementation. Some notes …
What is Python's equivalent of && (logical-and) in an if-statement?
Sep 13, 2023 · There is no bitwise negation in Python (just the bitwise inverse operator ~ - but that is not equivalent to not). See also 6.6. Unary arithmetic and bitwise/binary operations and …
What does the "at" (@) symbol do in Python? - Stack Overflow
Jun 17, 2011 · Functions, in Python, are first class objects - which means you can pass a function as an argument to another function, and return functions. Decorators do both of these things. If …
python - What is the purpose of the -m switch? - Stack Overflow
You must run python my_script.py from the directory where the file is located. Alternatively - python path/to/my_script.py. However, you can run python -m my_script (ie refer to the script …
What does [:-1] mean/do in python? - Stack Overflow
Mar 20, 2013 · Working on a python assignment and was curious as to what [:-1] means in the context of the following code: instructions = f.readline()[:-1] Have searched on here on S.O. …
python - Errno 13 Permission denied - Stack Overflow
Jul 16, 2020 · The problem here is your user doesn't have proper rights/permissions to open the file this means that you'd need to grant some administrative privileges to your python ide …
python - Iterating over dictionaries using 'for' loops - Stack Overflow
Jul 21, 2010 · In Python 3.x, iteritems() was replaced with simply items(), which returns a set-like view backed by the dict, like iteritems() but even better. This is also available in 2.7 as …
python - What exactly do "u" and "r" string prefixes do, and what …
There are two types of string in Python 2: the traditional str type and the newer unicode type. If you type a string literal without the u in front you get the old str type which stores 8-bit …
python - How do I execute a program or call a system command?
Note on Python version: If you are still using Python 2, subprocess.call works in a similar way. ProTip: shlex.split can help you to parse the command for run, call, and other subprocess …
Is there a "not equal" operator in Python? - Stack Overflow
Jun 16, 2012 · Python is dynamically, but strongly typed, and other statically typed languages would complain about comparing different types. There's also the else clause: # This will …
What does colon equal (:=) in Python mean? - Stack Overflow
In Python this is simply =. To translate this pseudocode into Python you would need to know the data structures being referenced, and a bit more of the algorithm implementation. Some notes …
What is Python's equivalent of && (logical-and) in an if-statement?
Sep 13, 2023 · There is no bitwise negation in Python (just the bitwise inverse operator ~ - but that is not equivalent to not). See also 6.6. Unary arithmetic and bitwise/binary operations and …
What does the "at" (@) symbol do in Python? - Stack Overflow
Jun 17, 2011 · Functions, in Python, are first class objects - which means you can pass a function as an argument to another function, and return functions. Decorators do both of these things. If …
python - What is the purpose of the -m switch? - Stack Overflow
You must run python my_script.py from the directory where the file is located. Alternatively - python path/to/my_script.py. However, you can run python -m my_script (ie refer to the script …
What does [:-1] mean/do in python? - Stack Overflow
Mar 20, 2013 · Working on a python assignment and was curious as to what [:-1] means in the context of the following code: instructions = f.readline()[:-1] Have searched on here on S.O. …
python - Errno 13 Permission denied - Stack Overflow
Jul 16, 2020 · The problem here is your user doesn't have proper rights/permissions to open the file this means that you'd need to grant some administrative privileges to your python ide …
python - Iterating over dictionaries using 'for' loops - Stack Overflow
Jul 21, 2010 · In Python 3.x, iteritems() was replaced with simply items(), which returns a set-like view backed by the dict, like iteritems() but even better. This is also available in 2.7 as …
python - What exactly do "u" and "r" string prefixes do, and what …
There are two types of string in Python 2: the traditional str type and the newer unicode type. If you type a string literal without the u in front you get the old str type which stores 8-bit …
python - How do I execute a program or call a system command?
Note on Python version: If you are still using Python 2, subprocess.call works in a similar way. ProTip: shlex.split can help you to parse the command for run, call, and other subprocess …
